2003 Rookie Draft Order
- Hayward Hawks ( 59-103)
- Round 1 pick: CF Keven Christofferso
- Round 2 pick: P Douglas Willams
- Round 3 pick: C Howard Pettigrew
- Round 4 pick: P Benjamin Russell
- Round 5 pick: P John Gray
- California Bombers (60-102)
- Round 1 pick: RF Samuel Felker
- Round 2 pick: P Luis Borquez
- Round 3 pick: P Carl Goley
- Round 4 pick: P Eric Black
- Round 5 pick: RF Homer Dameron
- Knoxville Hill cats (61-101)
- Round 1 pick: P Randall James
- Round 2 pick: 2B Paul Boswell
- Round 3 pick: C Jeremy Smith
- Round 4 pick: 3B Harlan Mcmillen
- Round 5 pick: RF Kenneth Jones
- Houston Rockhounds (64-98)
- Round 1 pick: CF Lloyd Zoeller
- Round 2 pick: P Edgardo Carter
- Round 3 pick: P Kevin Laster
- Round 4 pick: P Billy Blanchard
- Round 5 pick: P Billy Barren
- Brooklyn Tides (70-92)
- Round 1 pick: 1B Charles Gallucci
- Round 2 pick: 2B Alan Townsley
- Round 3 pick: P Chester Briscoe
- Round 4 pick: 1B Joe Gray
- Round 5 pick: P Marion Corliss
- Huntington Foresters (73-89)
- Round 1 pick: 3B Joseph Deming
- Round 2 pick: C Gary Leighty
- Round 3 pick: RF Christopher Jones
- Round 4 pick: 1B James Richmond
- Round 5 pick: P Benjamin Bell
- Baltimore Brew Crew (73-89)
- Round 1 pick: SS Oswaldo Cowherd
- Round 2 pick: SS Ricky Pennington
- Round 3 pick: 3B Patrick Carter
- Round 4 pick: 3B John Truby
- Round 5 pick: 2B Charles Noel
- Cros-lex Pioneers (75-87)
- Round 1 pick: 2B Robert Lowery
- Round 2 pick: LF Glenn Ledet
- Round 3 pick: P Gerald Henriquez
- Round 4 pick: 2B John Baxley
- Round 5 pick: RF Joel Hobgood
- Phoenix Scorpions (76-86)
- Round 1 pick: CF Nathan Paulk
- Round 2 pick: P Earl Murphy
- Round 3 pick: 2B George Bloss
- Round 4 pick: P Martin Shanahan
- Round 5 pick: P Nicholas Walker
- Albany Polecats (76-86)
- Round 1 pick: P Russell Miles
- Round 2 pick: CF James Norris
- Round 3 pick: 1B John Kron
- Round 4 pick: 2B William Dolly
- Round 5 pick: P Kristofer Cooksey
- Aurora Devils (77-85)
- Round 1 pick: SS Shaun Brown
- Round 2 pick: 1B Alan Bezanson
- Round 3 pick: RF George Lucht
- Round 4 pick: LF Eugene Morabito
- Round 5 pick: P Johnny Paschal
- New Jersey Springboks (77-85)
- Round 1 pick: LF Eugene Reece
- Round 2 pick: SS Jared Primeaux
- Round 3 pick: 2B Melvin Douglas
- Round 4 pick: P Alfred Spielman
- Round 5 pick: P David Craft
- North Carolina Tarheels (79-83)
- Round 1 pick: SS Fred Hansen
- Round 2 pick: 1B Marion Hirano
- Round 3 pick: P Kenneth Mazurek
- Round 4 pick: 2B George Mcleod
- Round 5 pick: 1B Dominic Guest
- St. Louis Browns (85-77)
- Round 1 pick: C Erin Dunton
- Round 2 pick: C Philip Lemus
- Round 3 pick: P Garfield Hayden
- Round 4 pick: P Wyatt Jones
- Round 5 pick: P John Elbert
- Stripling Warriors (85-77)
- Round 1 pick: 2B Thomas Moore
- Round 2 pick: C Walter Hildreth
- Round 3 pick: P William Wilber
- Round 4 pick: SS Daniel Dewar
- Round 5 pick: P James Schwartz
- Oklahoma City Raptors (85-77)
- Round 1 pick: P Clifford King
- Round 2 pick: 1B Clyde Mork
- Round 3 pick: P Floyd Killebrew
- Round 4 pick: CF John Lenox
- Round 5 pick: P Alberto Alling
- Calgary Cannons (86-76)
- Round 1 pick: 3B Robert Brewington
- Round 2 pick: CF Gerardo Brashears
- Round 3 pick: 1B Matthew Cortina
- Round 4 pick: 2B Ken Godina
- Round 5 pick: P David Boothby
- Men In Black (89-73)
- Round 1 pick: LF Marty Coker
- Round 2 pick: 2B Jeremy Storm
- Round 3 pick: P William Nicosia
- Round 4 pick: P Gaston Acklin
- Round 5 pick: P Kenneth Danielson
- Portland Sea Dogs (90-72)
- Round 1 pick: P Norman Mcsherry
- Round 2 pick: P Alton Ingraham
- Round 3 pick: P Kenneth Kindel
- Round 4 pick: 3B Kenneth Belcher
- Round 5 pick: P Steve Nida
- New York Yankees (91-71)
- Round 1 pick: 1B Andrew Angeles
- Round 2 pick: C Prince Cabello
- Round 3 pick: P Dan Pierce
- Round 4 pick: 3B Ronald Procopio
- Round 5 pick: P Jerry Spicer
- Ohio Thunder Shock (91-71)
- Round 1 pick: 1B Jeffrey Schatz
- Round 2 pick: 3B Todd Leanos
- Round 3 pick: P Richard Lammers
- Round 4 pick: P Andres Burse
- Round 5 pick: P Hyman Mcneil
- New York Highlanders (95-67)
- Round 1 pick: P Charles Ross
- Round 2 pick: P Scott Vasquez
- Round 3 pick: P Jay Edgington
- Round 4 pick: P Aubrey Earhart
- Round 5 pick: P James Landreneau
- Texas Thundering Herd (101-61)
- Round 1 pick: P David Stuck
- Round 2 pick: C Brian Gray
- Round 3 pick: P Oswaldo Wingfield
- Round 4 pick: RF Ryan Andress
- Round 5 pick: P David Herb
- Toronto Blue Jays (126-36)
- Round 1 pick: P Andy Wafer
- Round 2 pick: P Patrick Barrientes
- Round 3 pick: RF Andrew Johnson
- Round 4 pick: P Shane Leonetti
- Round 5 pick: P Jay Brouillette